Ben Reilly's fate is revealed in 'Spider-Man Beyond' finale

gamesradar.com:

The 'Spider-Man Beyond' era comes to a close in March 30's Amazing Spider-Man #93, and with it, the current volume of the title. 'Spider-Man Beyond' has been releasing weekly, focusing on Ben Reilly as the main Spider-Man working in the employ of the Beyond Corporation while Peter Parker suffered severe radiation poisoning.

Now, Ben Reilly's latest Spidey saga wraps up with some huge developments for both Peter Parker and his clone, while potentially setting the stage for Ben and Peter to cross paths again in the upcoming relaunched Amazing Spider-Man title.

In recent issues of Amazing Spider-Man, Ben Reilly has been having psychological issues stemming from the degradation of his implanted memories of Peter Parker's life. With amnesia setting in, and Ben losing all connection to his humanity as a clone, he begins to resent Peter Parker for being his progenitor and the ultimate owner of the Spider-Man identity.

Ben's Beyond Corporation handler Maxine Danger offers him a solution, a special helmet that she claims, if worn by Peter Parker, will restore Ben Reilly's memories and make him whole again.

Peter arrives at Beyond in response to Ben rampaging through their headquarters as he tries to find out why he's suffering amnesia, clearly fraying and becoming more volatile. Ben confronts Peter about the loss of his memories, asking Peter to wear the helmet given to him by Maxine. 

Skeptical that it could do what she claims, or that it would even help Ben, Peter refuses, saying he can get Ben help another way. But Ben becomes violent, attempting to subdue Peter and force the helmet on him, resulting in a full-on brawl between the pair.

As Peter and Ben fight, Maxine receives approval from the board of the Beyond Corporation